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Species belonging to selected taxon:
Ipomoea batatas
,
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Petunia axillaris subsp. axillaris
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Capsicum annuum
,
Solanum tuberosum
,
Ipomoea nil
ABOUT THIS RECORD
ID:
MNEST054661
species:
Solanum tuberosum
miRNA family:
MIR157
source:
PMRD, original name:
stu-miR157a
Taxonomy by NCBI:
Solanum tuberosum
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGATAGAGAGCAC
miRNA*
GCTCTCTATGCTTCTGTCAT
mismatches:
1
bulges:
1
View larger
pre-miRNA
TTGACAGAAGATAGAGAGCAC
TAATGATGATATGCTAATTTCATTCAGCAAAAGCATCTCACTTCATTTGT
GCTCTCTATGCTTCTGTCAT
dot-bracket secondary structure
.((((((((((((((((((((
.((((((((.(((((................))))).)))..))))).))
))))))))).))))))))).
SIMILARITIES
miRBase
sly-MIR156a
:
1e-30
PMRD
sly-miR156a
:
1e-30
microPC
miR157
:
4e-46
UniProt
no hits
RFAM
no hits
Identical with:
miR157
from microPC (
MNEST045968
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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