miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST054663
species: Solanum tuberosum
miRNA family: MIR157
source: PMRD, original name: stu-miR157c

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGAGAGAGAGCAC

miRNA*
GTTCAG

mismatches: 16
bulges: 0

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pre-miRNA
TTGACAGAAGAGAGAGAGCACCACTTGAATCTGAGACTCCAGGAAAATAGTCTCCAGAAGGAACACTAGGATAACTGGTCCTGGTAGCTGAACCTTGCAA
AACAAGCTCACTGGCAGCATTTTCAGAGTTATTCAGCCAAGGACGTTGAAGGAACTTCCCTGATGATTGATGATCCCATCCTTGTTCAG


dot-bracket secondary structure
...............(((((...((((...(((((((((...((((((.((..((((..((...((((((((.....)))))))).((........))..
......))..))))..)))))))).)))))..)))).))))..((((..(((......)))))))...((((....))))..)))))..



SIMILARITIES
miRBase far-MIR529: 0.0001

PMRD nbe-miR157b: 0.000000000003

microPC miR157: 0.0001
UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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