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Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST054666
species: Solanum tuberosum
miRNA family: MIR171
source: PMRD, original name: stu-miR170

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGCGCCAATATC

miRNA*
TGACGAGGCACCATCA

mismatches: 5
bulges: 3

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pre-miRNA
TGATTGAGCCGCGCCAATATCATTTGCGCGTTTGAGAATTGTCCAGCCAGCAATAGTTCAGAGGCCTGAAAAATCTGGTCATAAATAAACTGTTGTTCCT
GCAATTGATGACGAGGCACCATCA


dot-bracket secondary structure
.(((.(.(((.((....(((((.((((..(((.((......)).))).((((((((((....((((.((....)).)))).......))))))))))...
)))).))))).)).))).).))).



SIMILARITIES
miRBase sbi-MIR171j: 0.00002

PMRD stu-miR171: 3e-66

microPC miR171: 0.0001
UniProt no hits

RFAM MIR171_1: 0.0004

Identical with: stu-miR171 from PMRD (MNEST054667)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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