miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST054668
species: Solanum tuberosum
miRNA family: MIR172
source: PMRD, original name: stu-miR172

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGAATCTTGATGATGCTGCAT

miRNA*
GCAGCACCATCAAGATTCACA

mismatches: 2
bulges: 0

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pre-miRNA
GTGCAGCACCATCAAGATTCACATAGAAAATATGGACTATGAAATGAAATATGCCCAATTTTTGAATACATGAGAATCTTGATGATGCTGCAT

dot-bracket secondary structure
((((((((.(((((((((((.(((.((((((.(((.((((........))).).)))))))))......))).))))))))))).))))))))


SIMILARITIES
miRBase sbi-MIR172d: 0.0000003

PMRD zma-miR172d: 0.000001

microPC miR172: 0.000001
UniProt no hits

RFAM mir-172: 0.000005

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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