miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST007354
species: Solanum tuberosum
miRNA family: MIR2869
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCACGACATTAAATTCTGGGA

miRNA*
CTGGAATTTATTGACGTTAGA

mismatches: 5
bulges: 0

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pre-miRNA
AAGGGTGGGACCCTGGAATTTATTGACGTTAGAAGTGGTACTTGTGTGGAAGTAGTGGAAGCCCATGGTGGATCTGTTCAGTCAATTGCTCTAACTCCAG
ATGGGACAGGGTTTCTAACTGGCAGTGCCGACCACGACATTAAATTCTGGGAATTTCAAAT


dot-bracket secondary structure
.....(((((.(((((((((((.((.(((......((((((...(((...(((..(((((((((.((....(((((...(((...........))).)))
))....)))))))))))))).)))))))))...))).)).)))))))))))..)))))...



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q8BHB4|WDR3_MOUSE: 0.000000003

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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