miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST007367
species: Solanum tuberosum
miRNA family: MIRf564
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGCATCATCAAGATTCATAC

miRNA*
GAGAATCTTGATGATGCTGCA

mismatches: 1
bulges: 0

View larger
pre-miRNA
AACAATTAACAACAGTTGTTGTTTGCAGATGTAGCATCATCAAGATTCATACATGAAAATTAAGAGGCAAGGTTATATATGTAGCTTTAATTGAAATGAA
AAATATAATATATCATGACCATCGTCTATTTATTTTAAAGTGAGAATCTTGATGATGCTGCATCAGCAATAAATAACTATCAGTGACAGA


dot-bracket secondary structure
.............(((((((..((((.(((((((((((((((((((((.(((...(((((.((.((((..((((((((((((..................
.......)))))).))))))...)))).)).)))))...))).))))))))))))))))))))).))))..)))))))............



SIMILARITIES
miRBase sly-MIR172b: 7e-59

PMRD sly-miR172b: 7e-59

microPC miR172: 0.000002
UniProt no hits

RFAM mir-172: 0.0000000000008
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;