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Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST007376
species: Solanum tuberosum
miRNA family: MIRf564
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAGCATCATCAAGATTCTCAT

miRNA*
 GTGAATCTTGATGGTGCTGCA

mismatches: 1
bulges: 0
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pre-miRNA
 ATTTGCCAATGCAGCATCATCAAGATTCTCATGTATTCAAAAATTGGGCATATTTCATTTCATAGTCCATATTTTCTATGTGAATCTTGATGGTGCTGCA
CTAGCAAG

dot-bracket secondary structure
..((((...(((((((((((((((((((.((((.....((((..(((((...............)))))..)))).)))).)))))))))))))))))))
...)))).


SIMILARITIES
miRBase bdi-MIR172a: 0.00000008

PMRD stu-miR172: 9e-48

microPC miR172: 0.000001		UniProt no hits

RFAM mir-172: 0.0000004		most similar mature miRNAs

Identical with: stu-miR172 from PMRD (MNEST054668)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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Liczniki na strone;