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Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST007388
species: Solanum tuberosum
miRNA family: MIR399
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGAGCTGCCCTG

miRNA*
GGGCTACTCTCTATTGGCATG

mismatches: 3
bulges: 0

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pre-miRNA
AATTTATAAGGGAAACAGTGGTAGGGCTACTCTCTATTGGCATGCAGTGATATATTTAAGCTGACATGCCAAAGGAGAGCTGCCCTGTTACTGTCTCTGT
TTAGTGT


dot-bracket secondary structure
..........(((.(((((((((((((..((((((.((((((((((((...........)))).)))))))).))))))..))))))))))))).)))..
.......



SIMILARITIES
miRBase sly-MIR399: 0.0000003

PMRD sly-miR399: 0.0000003

microPC miR399: 1e-31
UniProt no hits

RFAM mir-399: 0.00009
most similar mature miRNAs

Identical with: miR399 from microPC (MNEST046131)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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Liczniki na strone;