miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST046100
species: Solanum tuberosum
miRNA family: MIR157
source: microPC, original name: miR157

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGATAGAGAGCAC

miRNA*
GCTCTCTATGCTTCTGTCA

mismatches: 1
bulges: 1

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pre-miRNA
TGACAGAAGATAGAGAGCACTAATGATGATATGCTAATTTCATTCAGCAAAAGCATCTCACTTCATTTGTGCTCTCTATGCTTCTGTCA

dot-bracket secondary structure
.(((((((((((((((((((.((((((((.(((((................))))).)))..))))).))))))))))).)))))))).


SIMILARITIES
miRBase sly-MIR156a: 2e-29

PMRD stu-miR157a: 2e-45

microPC miR157: 2e-45
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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