miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST046131
species: Solanum tuberosum
source: microPC, original name: miR399

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGAGCTGCCCT

miRNA*
GGCTACTCTCTATTGGCATG

mismatches: 3
bulges: 0

View larger
pre-miRNA
AGGGCTACTCTCTATTGGCATGCAGTGATATATTTAAGCTGACATGCCAAAGGAGAGCTGCCCT

dot-bracket secondary structure
(((((..((((((.((((((((((((..((....)).)))).)))))))).))))))..)))))


SIMILARITIES
miRBase sly-MIR399: 0.0000007

PMRD sly-miR399: 0.0000007

microPC miR399: 9e-31
UniProt no hits

RFAM mir-399: 0.0008

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record





Liczniki na strone;