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Species belonging to selected taxon:
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Solanum tuberosum
ABOUT THIS RECORD
ID:
MNEST054663
species:
Solanum tuberosum
miRNA family:
MIR157
source:
PMRD, original name:
stu-miR157c
Taxonomy by NCBI:
Solanum tuberosum
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGAGAGAGAGCAC
miRNA*
GTTCAG
mismatches:
16
bulges:
0
View larger
pre-miRNA
TTGACAGAAGAGAGAGAGCAC
CACTTGAATCTGAGACTCCAGGAAAATAGTCTCCAGAAGGAACACTAGGATAACTGGTCCTGGTAGCTGAACCTTGCAA
AACAAGCTCACTGGCAGCATTTTCAGAGTTATTCAGCCAAGGACGTTGAAGGAACTTCCCTGATGATTGATGATCCCATCCTT
GTTCAG
dot-bracket secondary structure
...............(((((.
..((((...(((((((((...((((((.((..((((..((...((((((((.....)))))))).((........))..
......))..))))..)))))))).)))))..)))).))))..((((..(((......)))))))...((((....))))..)
))))..
SIMILARITIES
miRBase
far-MIR529
:
0.0001
PMRD
nbe-miR157b
:
0.000000000003
microPC
miR157
:
0.0001
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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