miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST007354
species: Solanum tuberosum
miRNA family: MIR2869
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCACGACATTAAATTCTGGGA

miRNA*
 CTGGAATTTATTGACGTTAGA

mismatches: 5
bulges: 0
View larger
pre-miRNA
 AAGGGTGGGACCCTGGAATTTATTGACGTTAGAAGTGGTACTTGTGTGGAAGTAGTGGAAGCCCATGGTGGATCTGTTCAGTCAATTGCTCTAACTCCAG
ATGGGACAGGGTTTCTAACTGGCAGTGCCGACCACGACATTAAATTCTGGGAATTTCAAAT

dot-bracket secondary structure
.....(((((.(((((((((((.((.(((......((((((...(((...(((..(((((((((.((....(((((...(((...........))).)))
))....)))))))))))))).)))))))))...))).)).)))))))))))..)))))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q8BHB4|WDR3_MOUSE: 0.000000003

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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