miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST007396
species: Solanum tuberosum
miRNA family: MIR827
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATAGATGACCATCAACAAACA

miRNA*
TTTGTTGATGTTCATCTAATC

mismatches: 2
bulges: 0

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pre-miRNA
TTAACATGAAGTGATGAAGATGTTTGTTGATGTTCATCTAATCATGGCATATTAATGGTTGCAAAAACTATGCCAAATGATATGATGAATAGATGACCAT
CAACAAACA
AATTCATAACTACACAATT


dot-bracket secondary structure
......((.(((.(((((..((((((((((((.(((((((.((((..(((((((((((((.....))))))......))))))))))).))))))).)))
)))))))))
..))))).))).)).....



SIMILARITIES
miRBase csi-MIR827: 0.000006

PMRD no hits

microPC miR827: 4e-44
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: miR827 from microPC (MNEST044800)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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