miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST045502
species: Solanum tuberosum
source: microPC, original name: miR390

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CGCTATCCATCTTGAGTTT

miRNA*
GCTCAGGAGGGATAGCACC

mismatches: 2
bulges: 0

View larger
pre-miRNA
AAGCTCAGGAGGGATAGCACCATGAATACATCTTAATAACTATCTATAGCGCTATCCATCTTGAGTTT

dot-bracket secondary structure
((((((((((.(((((((.(.(((.(((............))).))).).))))))).))))))))))


SIMILARITIES
miRBase aly-MIR390b: 0.000003

PMRD vvi-miR390: 0.00005

microPC miR390: 4e-33
UniProt no hits

RFAM MIR390: 0.0002

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record





Liczniki na strone;