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Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST046015
species: Solanum tuberosum
miRNA family: MIR399
source: microPC, original name: miR399

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGAGCTGCCCTG

miRNA*
GGGCTACTCTCTATTGGCATG

mismatches: 3
bulges: 0

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pre-miRNA
TAGGGCTACTCTCTATTGGCATGCAGTGATATATTTAAGCTGACATGCCAAAGGAGAGCTGCCCTG

dot-bracket secondary structure
((((((..((((((.((((((((((((..((....)).)))).)))))))).))))))..))))))


SIMILARITIES
miRBase sly-MIR399: 0.0000002

PMRD sly-miR399: 0.0000002

microPC miR399: 1e-30
UniProt no hits

RFAM mir-399: 0.0002

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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