miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST046134
species: Solanum tuberosum
miRNA family: MIR156
source: microPC, original name: miR156

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCAC

miRNA*
GCTCACTTCTCATTCTGTCA

mismatches: 1
bulges: 2

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pre-miRNA
TGACAGAAGAGAGTGAGCACACGCAGTCGAATTGTATAAACATTTATACAATTGTCATTTGCGTGTGCTCACTTCTCATTCTGTCA

dot-bracket secondary structure
.(((((((((((((((((((((((((..(((((((((((....)))))))))..))..)))))))))))))).)))).))))))).


SIMILARITIES
miRBase ctr-MIR156: 0.00000006

PMRD stu-miR156a: 1e-43

microPC miR156: 1e-43
UniProt no hits

RFAM mir-156: 0.000001

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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