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Species belonging to selected taxon:
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Capsicum annuum
,
Solanum tuberosum
ABOUT THIS RECORD
ID:
MNEST046596
species:
Solanum tuberosum
miRNA family:
MIR396
source:
microPC, original name:
miR396
Taxonomy by NCBI:
Solanum tuberosum
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCCACAGCTTTCTTGAACT
miRNA*
TCCAAGAAAGCTGTGGGA
mismatches:
1
bulges:
0
View larger
pre-miRNA
TTCCACAGCTTTCTTGAACT
TCTTCTTGCTAAATTTTGATCTCTAAATTGATAATTTTGAGATGAAATTTTTGAAGCTATGAAAG
TCCAAGAAAGCTGTG
GGA
dot-bracket secondary structure
((((((((((((((((.(((
(..((..((((((.(((.(((((.((((.....)))).))))).))).)))...)))...)))))
).)))))))))))))
)))
SIMILARITIES
miRBase
zma-MIR396f
:
0.00000002
PMRD
zma-miR396g
:
0.00000002
microPC
miR396
:
9e-54
UniProt
no hits
RFAM
MIR396: 0.0000004
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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