miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST007364
species: Solanum tuberosum
miRNA family: MIR168
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGCTTGGTGCAGGTCGGGAC

miRNA*
CCCGCCTTGCATCAACTGAAT

mismatches: 2
bulges: 0

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pre-miRNA
GCCTCTCATTCGCTTGGTGCAGGTCGGGACCTACCTCGCCGGCACAATGGCGGTAGCTGACGGCGACGCCAGCGTACCGGTAAAAACTAATTTTTTACAT
GTTGTCTGTGGCGTAGTTTGGGTCCCGCCTTGCATCAACTGAATAGGAGA


dot-bracket secondary structure
..((((.(((((.((((((((((.((((((((((..(((((..((((((.(((((((((.((....)).)))).)))))(((((((.....))))))).)
)))))...)))))..))..)))))))).)))))))))).))))).)))).



SIMILARITIES
miRBase ptc-MIR168b: 0.0000005

PMRD stu-miR168: 5e-44

microPC miR168: 3e-67
UniProt no hits

RFAM MIR168: 0.000009
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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