miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST007365
species: Solanum tuberosum
miRNA family: miR168a
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCCGCCTTGCATCAACTGAAT

miRNA*
TCGCTTGGTGCAGGTCGGGAC

mismatches: 2
bulges: 0

View larger
pre-miRNA
TTTCTGTTGCGGCGGCCTCTCATTCGCTTGGTGCAGGTCGGGACCTACCTCGCCGGCAACAATGGCGGTAGCTGACGGCGACGGCAGCTTACCGGTAAAA
ACTTTTTTTTTTTACATGTCTGTGGCGTAGTTTGGGTCCCGCCTTGCATCAACTGAATAGGAGACTGCGGTGAAATTT


dot-bracket secondary structure
......((((.((((.((((.(((((.((((((((((.((((((((((..(((((.(((((....(((((((((.((....)).)))).)))))((((((
(.......))))))).))).)))))))..))..)))))))).)))))))))).))))).)))).)))).)))).....



SIMILARITIES
miRBase tcc-MIR168: 0.0000000006

PMRD stu-miR168: 1e-51

microPC miR168: 1e-51
UniProt no hits

RFAM MIR168: 0.0000000007
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;