miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST007371
species: Solanum tuberosum
miRNA family: MIR235
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTAATGTGTTGTCTTTGTTAG

miRNA*
ACCAGTTTTAATATCAGTGGTT

mismatches: 5
bulges: 1

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pre-miRNA
GAGTAAGTATTTTGGATTTAAGTTAATTTAGCTAATGTGTTGTCTTTGTTAGTAAGGGGAGGTTTATGTTTGATGAAATTTTTGATAAATAAAGGGGAAA
ATTTTTAGAAAAATATAAAGAGGATTAAAGTGCGTTCTCCACCTCCTCTTAGTTTGTAATGAACTACCAGTTTTAATATCAGTGGTTGTGTTTGTGTCTA
AAAAAAAAAAAAAAA


dot-bracket secondary structure
.........((((((((......(((..((((((.(((((((...(((.((((((((((((((((((((((...(((((((((.............))))
))))).....)))))))).((((((........)))))).))))))))))............)))).)))...))))).)).))))))...))).)))))
)))............



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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