miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST007373
species: Solanum tuberosum
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCACA

miRNA*
TGCTCACTTCTCATTCTGTCAGC

mismatches: 0
bulges: 2

View larger
pre-miRNA
AGAATCAAGACTGACAGAAGAGAGTGAGCACACGCAGTCGAATTGTATAAACATTTATACAATTGTCATTTGCGTGTGCTCACTTCTCATTCTGTCAGCT
CTCTCAG


dot-bracket secondary structure
.......((((((((((((((((((((((((((((((..(((((((((((....)))))))))..))..)))))))))))))).)))).))))))))).)
)).....



SIMILARITIES
miRBase tcc-MIR156c: 0.0000000003

PMRD stu-miR156a: 1e-43

microPC miR156: 1e-43
UniProt no hits

RFAM mir-156: 0.0000004
most similar mature miRNAs

Identical with: miR156 from microPC (MNEST046134)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;