miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Solanum tuberosum
ABOUT THIS RECORD
ID:
MNEST045455
species:
Solanum tuberosum
source:
microPC, original name:
miR396
Taxonomy by NCBI:
Solanum tuberosum
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCCACAGCTTTCTTGAAC
miRNA*
CCAAGAAAGCTGTGGGA
mismatches:
1
bulges:
0
View larger
pre-miRNA
TTCCACAGCTTTCTTGAAC
TTCTTCTTGCTAAATTTTGATCTCTAAATTGATAATTTTGAGATGAAATTTTTGAAGCTATGAAAGT
CCAAGAAAGCTGTG
GGA
dot-bracket secondary structure
((((((((((((((((.((
((..((..((((((.(((.(((((.((((.....)))).))))).))).)))...)))...))))))
.)))))))))))))
)))
SIMILARITIES
miRBase
zma-MIR396f
:
0.00000002
PMRD
zma-miR396g
:
0.00000002
microPC
miR396
:
9e-54
UniProt
no hits
RFAM
MIR396: 0.0000004
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record