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Species belonging to selected taxon:
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Solanum tuberosum
ABOUT THIS RECORD
ID:
MNEST045502
species:
Solanum tuberosum
source:
microPC, original name:
miR390
Taxonomy by NCBI:
Solanum tuberosum
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CGCTATCCATCTTGAGTTT
miRNA*
GCTCAGGAGGGATAGCACC
mismatches:
2
bulges:
0
View larger
pre-miRNA
AA
GCTCAGGAGGGATAGCACC
ATGAATACATCTTAATAACTATCTATAG
CGCTATCCATCTTGAGTTT
dot-bracket secondary structure
((
((((((((.(((((((.(.
(((.(((............))).))).)
.))))))).))))))))))
SIMILARITIES
miRBase
aly-MIR390b
:
0.000003
PMRD
vvi-miR390
:
0.00005
microPC
miR390
:
4e-33
UniProt
no hits
RFAM
MIR390: 0.0002
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record