miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST045968
species: Solanum tuberosum
miRNA family: MIR157
source: microPC, original name: miR157

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGATAGAGAGCAC

miRNA*
GCTCTCTATGCTTCTGTCA

mismatches: 1
bulges: 1

View larger
pre-miRNA
TTGACAGAAGATAGAGAGCACTAATGATGATATGCTAATTTCATTCAGCAAAAGCATCTCACTTCATTTGTGCTCTCTATGCTTCTGTCA

dot-bracket secondary structure
.((((((((((((((((((((.((((((((.(((((................))))).)))..))))).))))))))))).)))))))))


SIMILARITIES
miRBase sly-MIR156a: 6e-30

PMRD stu-miR157a: 4e-46

microPC miR157: 2e-45
UniProt no hits

RFAM no hits

Identical with: stu-miR157a from PMRD (MNEST054661)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record





Liczniki na strone;