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Species belonging to selected taxon:
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Solanum tuberosum
ABOUT THIS RECORD
ID:
MNEST054657
species:
Solanum tuberosum
source:
PMRD, original name:
stu-miR156b
Taxonomy by NCBI:
Solanum tuberosum
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGAGAGCAC
miRNA*
CAACTGAAGCAAA
mismatches:
15
bulges:
2
View larger
pre-miRNA
ATGCTGCTTCATTTCATGGAATGTCTTTGATGCTCCACTTGATGAAGCTGCGACGA
CAACTGAAGCAAA
TCAATAGTGGTACCATCTTCACAAGAAAGTA
GATTCCTGGTGTTTACGTAATCTGATCCTTGAAGACTTCCACAATTGTTTCTTAGCATCTGTTCCAAGTGACCCTCTGCAGAAATTACTTCAGATAAATT
ATAAATATTGGACACTGTACTTGCTGAACCCTTTGGGCTAGCTCCTGGGAAACATTCAGATGTCTGTGTCATGTTGTAATGGGTGTTACTGCGAGGTGTA
ATAAGGTGGTGAGCACTAGGAGGAACTACAGATGAATAATTTGATGTGTCCTGTGATTGAGA
TGACAGAAGAGAGAGAGCAC
dot-bracket secondary structure
.(((.((((((((...((((..(((...)))..))))...)))))))).)))....
...(((...((..
(((((.(..(.((((((.((....))..(((
(.((((((((((((((...((((.(((((((.........(((..((((....))))..)))....((((((((((((.((......)).))))...(((
((((......(((((.(.((...((((((((...(((....)))..))).....)))))..))).)))))...))))))).)).)))))).))))).)).
...)))).))))))))))))))...)))).............)))).)).)..).)))))..
)).)))..............
SIMILARITIES
miRBase
mtr-MIR156
:
0.000005
PMRD
gma-miR156h
:
0.00000002
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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