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Species belonging to selected taxon:
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Solanum tuberosum
ABOUT THIS RECORD
ID:
MNEST054658
species:
Solanum tuberosum
source:
PMRD, original name:
stu-miR156c
Taxonomy by NCBI:
Solanum tuberosum
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGAGAGCAC
miRNA*
CACCTCGATTAAA
mismatches:
12
bulges:
1
View larger
pre-miRNA
TGACAGAAGAGAGAGAGCAC
GAGGAAATTCCGGTCCTGTAGCCATATTGAACATGGATTCCTTGG
CACCTCGATTAAA
AACCTCG
dot-bracket secondary structure
..........(((.(.((.(
((((((..((((.((..(((....))).))...))))))))))))
).)))).......
.......
SIMILARITIES
miRBase
zma-MIR156j
:
0.0002
PMRD
stu-miR157b
:
4e-43
microPC
miR157
:
0.0002
UniProt
no hits
RFAM
no hits
Identical with:
stu-miR157b
from PMRD (
MNEST054662
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
download this record