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Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST054661
species: Solanum tuberosum
miRNA family: MIR157
source: PMRD, original name: stu-miR157a

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGATAGAGAGCAC

miRNA*
GCTCTCTATGCTTCTGTCAT

mismatches: 1
bulges: 1

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pre-miRNA
TTGACAGAAGATAGAGAGCACTAATGATGATATGCTAATTTCATTCAGCAAAAGCATCTCACTTCATTTGTGCTCTCTATGCTTCTGTCAT

dot-bracket secondary structure
.((((((((((((((((((((.((((((((.(((((................))))).)))..))))).))))))))))).))))))))).


SIMILARITIES
miRBase sly-MIR156a: 1e-30

PMRD sly-miR156a: 1e-30

microPC miR157: 4e-46
UniProt no hits

RFAM no hits

Identical with: miR157 from microPC (MNEST045968)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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