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Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST007377
species: Solanum tuberosum
miRNA family: MIR172
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAATCTTGATGGTGCTGCAC

miRNA*
GCAGCATCATCAAGATTCTCA

mismatches: 2
bulges: 0

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pre-miRNA
GAATTAAAGAATCAAGTCATCAATTTGCCAATGCAGCATCATCAAGATTCTCATGTATTCAAAAATTGGGCATATTTCATTTCATAGTCCATATTTTCTA
TGTGAATCTTGATGGTGCTGCACTAGCAAGCAACAACTGTATGTTGAGGCAA


dot-bracket secondary structure
........((......))......(((((..(((((((((((((((((((.((((.....((((..(((((...............)))))..)))).))
)).))))))))))))))))))).(((((.(((.....))).))))).)))))



SIMILARITIES
miRBase bdi-MIR172a: 0.0000001

PMRD stu-miR172: 1e-47

microPC miR172: 0.000002
UniProt no hits

RFAM mir-172: 0.0000006
most similar mature miRNAs

Identical with: stu-miR172 from PMRD (MNEST054668)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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