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Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST007378
species: Solanum tuberosum
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCCACAGCTTTCTTGAACTT

miRNA*
GTCCAAGAAAGCTGTGGGAAA

mismatches: 1
bulges: 0

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pre-miRNA
TAGTCATGCTTTTCCACAGCTTTCTTGAACTTCTTCTTGCTAAATTTTGATCTCTAAATTGATAATTTTGAGATGAAATTTTTGAAGCTATGAAAGTCCA
AGAAAGCTGTGGGAAA
AGATGGCA


dot-bracket secondary structure
..(((((..((((((((((((((((((.((((..((..((((((.(((.(((((.(((((...))))).))))).))).)))...)))...)))))).))
))))))))))))))))
..))))).



SIMILARITIES
miRBase vvi-MIR396b: 0.000000000007

PMRD vvi-miR396b: 0.000000000007

microPC miR396: 1e-53
UniProt no hits

RFAM MIR396: 0.000000000002
most similar mature miRNAs

Identical with: miR396 from microPC (MNEST046596)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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