miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST007382
species: Solanum tuberosum
miRNA family: MIR157
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGATAGAGAGCAC

miRNA*
GCTCTCTATGCTTCTGTCATC

mismatches: 0
bulges: 1

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pre-miRNA
AATTGATAGGAAGAAAGGTTGGTGATAATTGTTGACAGAAGATAGAGAGCACTAATGATGATATGCTAATTTCATTCAGCAAAAGCATCTCACTTCATTT
GTGCTCTCTATGCTTCTGTCATCACCTTCGCCCTCTTTCGTTTTTTCTTTTT


dot-bracket secondary structure
....((.((((.((((((..(((((....((.((((((((((((((((((((.((((((((.(((((................))))).)))..))))).
))))))))))).))))))))).))...))))).)))))).)))).)).....



SIMILARITIES
miRBase sly-MIR156a: 3e-30

PMRD stu-miR157a: 2e-46

microPC miR157: 8e-46
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: miR157 from microPC (MNEST045968)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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