miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST007397
species: Solanum tuberosum
miRNA family: MIRf34
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AATTGGGACAGAGGGAGTACT

miRNA*
TACTCCCTCCGTCCAATTTA

mismatches: 4
bulges: 1

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pre-miRNA
GTGTTTAAACAATACTCCCTCCGTCCAATTTAAGTGTCTTAGTTTGACTGAACACGGAATTTAAGAAGTAAAGAAAGACTTTAGAATCTTGTGGTCCTTA
AATTAAAGATGTGTGTAGTCATTTAATTGTTATGCTTAAACTTGCCATGTAATAATTGGAATTGAAAAAGTTACTAAATATAGAAAGAGACGCTCTTTTT
GGGACAAACCAAAAATGAAAGTATAAGACACTTAAATTGGGACAGAGGGAGTACTTCTTTATGA


dot-bracket secondary structure
((......))..(((((((((..((((((((((((((((((..(((((((.(((((.((((((((.....((((............))))......))))
)))).....))))).))))).((((((((((((((........))...)))))))))))).((....))(((.((..........)).)))..(((((((
((......))))))).)).))..))))))))))))))))))...)))))))))...........



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM MIR1122: 0.001
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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