ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR398
source: miRBase, original name: sbi-MIR398 (MI0013257)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCCG miRNA* GGGGCGGACTGGGAACACATG mismatches: 3 bulges: 0 |
pre-miRNA
GGGGGCGGACTGGGAACACATGGGAATGAGAGATGAGATTGCTCGGTCGTGCTGGCCCTGGGCTCGTAGTTGATCTGCTTGTATGCATGTGTTCTCAGGT
CGCCCCCGC
dot-bracket secondary structure
(((((((..(((((((((((((.(.(..((((((.((...((((((((.....))))..))))......)).)))).))..).).)))))))))))))..
)))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
GGGGGCGGACTGGGAACACATGGGAATGAGAGATGAGATTGCTCGGTCGTGCTGGCCCTGGGCTCGTAGTTGATCTGCTTGTATGCATGTGTTCTCAGGT
CGCCCCCGC
dot-bracket secondary structure
(((((((..(((((((((((((.(.(..((((((.((...((((((((.....))))..))))......)).)))).))..).).)))))))))))))..
)))))))..
SIMILARITIES| miRBase zma-MIR398b: 0.0000000000004 PMRD zma-miR398c: 0.0000000000004 microPC miR398: 0.000000000001 | UniProt no hits RFAM MIR398: 4e-56 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
