ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIRf10
source: miRNEST
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCAAAAGATTCGTCTCGCAA miRNA* GGTGACGAATGTTTTGTAGA mismatches: 5 bulges: 1 |
pre-miRNA
TACATTTGATTTGGTGACGAATGTTTTGTAGATGGATGATACAATATATCATACTGTAGCACTTTTGTTTGTATTTGATAAACATTGTCTAATCATAGAT
CAACTAGACTCAAAAGATTCGTCTCGCAAATTACAGGC
dot-bracket secondary structure
......(((((((..(((((((.(((((....(((.((((....(((.........(((.((...(((((((.....)))))))..)))))...))).))
)).)))....))))).)))))))...))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TACATTTGATTTGGTGACGAATGTTTTGTAGATGGATGATACAATATATCATACTGTAGCACTTTTGTTTGTATTTGATAAACATTGTCTAATCATAGAT
CAACTAGACTCAAAAGATTCGTCTCGCAAATTACAGGC
dot-bracket secondary structure
......(((((((..(((((((.(((((....(((.((((....(((.........(((.((...(((((((.....)))))))..)))))...))).))
)).)))....))))).)))))))...))))))).....
SIMILARITIES| miRBase osa-MIR2124e: 0.0000001 PMRD osa-miR445h: 0.0000004 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
