ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACTTCTCTTTCGGTCAGC mismatches: 2 bulges: 2 |
pre-miRNA
TGAATAAGGCGCTCCTGGATGTGGAGAGGCTCTTGAGAGATTGACAGAAGAGAGTGAGCACACGGCGCGACGAACGGCATAATATGTATGTCGTCCTCGC
CGCGTGCTCACTTCTCTTTCGGTCAGCCTCTTCTGTTGATGGCTTATCTCCCATCTAGATCCGCT
dot-bracket secondary structure
.......((((...(((((((.(((((((((.(((((((.(((((.(((((((((((((((.(((((.(((((...((((...))))...)))))..)))
)).)))))))).)))))))..))))).))))).....)).))))..))))))))))))...))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGAATAAGGCGCTCCTGGATGTGGAGAGGCTCTTGAGAGATTGACAGAAGAGAGTGAGCACACGGCGCGACGAACGGCATAATATGTATGTCGTCCTCGC
CGCGTGCTCACTTCTCTTTCGGTCAGCCTCTTCTGTTGATGGCTTATCTCCCATCTAGATCCGCT
dot-bracket secondary structure
.......((((...(((((((.(((((((((.(((((((.(((((.(((((((((((((((.(((((.(((((...((((...))))...)))))..)))
)).)))))))).)))))))..))))).))))).....)).))))..))))))))))))...))))
SIMILARITIES| miRBase zma-MIR156d: 5e-41 PMRD sbi-miR157: 2e-43 microPC miR156: 3e-42 | UniProt no hits RFAM mir-156: 9e-40 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST046791) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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