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Species belonging to selected taxon:

Sorghum propinquum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST008485
species: Sorghum bicolor
miRNA family: MIR159
source: miRNEST

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTG

miRNA*
GAGCTCCTATCATTCCAATGA

mismatches: 3
bulges: 0

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pre-miRNA
TGATGCTTGGATTCGAAGCGGAGCTCCTATCATTCCAATGAAGGGCCCTTTTCATGGGTGGTTCCGCTGCTCGTTCATGGTTCCCACTATCCTATCTCAT
CATGTATCTGTGTATGTACTCTAGAGGGCCGGAGAAGAGATTCATGTGGTCGTCAGTCTTTGAGATAGGCTTGTGATTTGCATGACCGAGGAGCTGCACC
GTCCCCTTGCTGGCCGCTCTTTGGATTGAAGGGAGCTCTGCATCCTGATCCATCCAT


dot-bracket secondary structure
..(((..((((((.((.(((((((((((.(((.(((((.((..((((.....((.(((((((...(((.((((.(((((.....(((...(((((((((.
..((..((((.((....))..)))).(((((..(((....)))...)))))..)).....)))))))))...))).....))))).)))).)))...)))
).)))..))..))))..)).))))).))).))))))))))).))..))))))..)))



SIMILARITIES
miRBase sbi-MIR159: 3e-117

PMRD sof-miR159a: 4e-83

microPC miR319: 4e-21
UniProt no hits

RFAM MIR159: 1e-126
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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