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Species belonging to selected taxon:

Striga hermonthica



ABOUT THIS RECORD

ID: MNEST002683
species: Striga hermonthica
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Striga hermonthica Striga Buchnereae Orobanchaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCATCTTCATCTTCATCGTGG

miRNA*
ACATGGTATGAAGCTGAGC

mismatches: 3
bulges: 2

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pre-miRNA
GATCTTCATCTTCATCTTCATCGTGGCCTAAACCTAGGGTTTGCTCCAATTCCTTCCTATCTTTAATCCCAATTCCTAAACGTATCTATAATCCGGAGTG
AACATATATGCAGCCGCCGAACGTAATCCTGCCGCCGCCGCCGCCGCCGTTTGCTATATAATATCGTTTCTTTCGCGAATCGATTCATGATTTGGGAATT
ATCAGTTATGATTATCCCCGTCGAATTTCAATTCTCATCGTCACATGGTATGAAGCTGAGCTA


dot-bracket secondary structure
....((((.((((((..((((.(((.((((....))))(((((((((..........(((.((((...........)))).)))..........))))))
))).(((((((((.((.((...........((.((....)).)))).)).)))).)))))..((((.(((......))).))))..(((((.((((.((.
((((....)))).)).))))..((((....))))..)))))))))))).)))))).))))...



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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