miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Taraxacum kok-saghyz
ABOUT THIS RECORD
ID:
MNEST002694
species:
Taraxacum kok-saghyz
miRNA family:
MIR171
source:
miRNEST
Taxonomy by NCBI:
Taraxacum kok-saghyz
Taraxacum
Crepidinae
Cichorieae
Cichorioideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATGAGCCGAACCAATATCACT
miRNA*
GTGGTATTGGTACGGTTCATCA
mismatches:
2
bulges:
1
View larger
pre-miRNA
GAAGCTCCACAACGAAGTCCTGTGACAGAGAAATAGACACGGC
GTGGTATTGGTACGGTTCATCA
ACTTTACTTCTTTGTATGTTTTGGAGTAGCCTTGA
C
ATGAGCCGAACCAATATCACT
CTTGTATGTTTCTTTGAAGAAAACATGGCTTTCTTTACCG
dot-bracket secondary structure
.............((((((.(((..((((((((((.(((.((.
(((((((((((.((((((((((
(..(((((((............)))))))..))))
.
.))))))).))))))))))))
).))).))))))))))......))).))))))........
SIMILARITIES
miRBase
vvi-MIR479
:
0.00000003
PMRD
vvi-miR479
:
0.00000003
microPC
miR171
:
0.0001
UniProt
no hits
RFAM
MIR171_2: 0.00000001
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record