miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Mus musculus
,
Sus scrofa
,
Bos taurus
,
Rattus norvegicus
,
Canis lupus familiaris
,
Ovis aries
,
Macaca fascicularis
,
Trichosurus vulpecula
,
Papio anubis
,
Homo sapiens
,
Peromyscus maniculatus bairdii
,
Pongo abelii
,
Ursus americanus
,
Equus caballus
,
Oryctolagus cuniculus
,
Macaca nemestrina
,
Cavia porcellus
,
Bos indicus
,
Bos sp.
,
Macropus eugenii
,
Peromyscus polionotus subgriseus
,
Capra hircus
,
Pan troglodytes verus
,
Macaca mulatta
ABOUT THIS RECORD
ID:
MNEST032079
species:
Mus musculus
miRNA family:
mir-449
source:
miRBase, original name:
mmu-mir-449c
(
MI0004645
)
Taxonomy by NCBI:
Mus musculus
Mus
Mus
Murinae
Muridae
Muroidea
Sciurognathi
Rodentia
Glires
Euarchontoglires
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGGCAGTGCATTGCTAGCTGG
miRNA*
GCTAGCTGCACTACCCTC
mismatches:
2
bulges:
3
View larger
pre-miRNA
AGGATGAAGTGTGGGTGTGTCAGGC
AGGCAGTGCATTGCTAGCTGG
CTGTTAGAACTTTATCCCAACAGTT
GCTAGCTGCACTACCCTC
TGCTGCACTCA
GAAGCATGC
dot-bracket secondary structure
.(.(((...(.((((((((.((((.
.((.((((((..((((((.((
(((((.((......))..)))))))
)))))))))))).)).))
)).))))))))
.)..))).)
SIMILARITIES
miRBase
rno-mir-449c
:
5e-37
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-449: 6e-46
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
MPSS, Solexa
references
[
1
] Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I,
Nucleic Acids Res. 34:1765-1771(2006).
,
"The expression profile of microRNAs in mouse embryos"
[
2
] Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A,
Mol Hum Reprod. 16:463-471(2010).
,
"MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"