miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Medicago sativa, Trifolium pratense, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST040656
species: Medicago truncatula
miRNA family: MIR156
source: miRBase, original name: mtr-MIR156i (MI0005626)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCAC

miRNA*
GCTCACTTCTCTTTCTGTCATC

mismatches: 0
bulges: 2

View larger
pre-miRNA
GATATTGACAGAAGAGAGTGAGCACATGCTGCAGTGATTGTATGATAGCATACAATTCTTGGTGCGTGCTCACTTCTCTTTCTGTCATCTTAT

dot-bracket secondary structure
.....((((((((((((((((((((..((((.((.(((((((((....)))))))))))))))..)))))))).)))).))))))))......


SIMILARITIES
miRBase gma-MIR156a: 0.0000000000003

PMRD tre-miR156: 1e-21

microPC miR156: 0.0000000000003
UniProt no hits

RFAM mir-156: 3e-41

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record

references

[1] Bonnet E, Unpublished (2007).,




Liczniki na strone;