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Species belonging to selected taxon:
Medicago sativa
,
Trifolium pratense
,
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST040666
species:
Medicago truncatula
miRNA family:
MIR164
source:
miRBase, original name:
mtr-MIR164c
(
MI0005616
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGAGAAGCAGGGCACGTGCA
miRNA*
CACGTGCTCCACTTTTCCAAC
mismatches:
2
bulges:
0
View larger
pre-miRNA
CTTGT
TGGAGAAGCAGGGCACGTGCA
ACCGTAGATCTCTCTCAAACTTCAATCTCATTTTG
CACGTGCTCCACTTTTCCAAC
TTGA
dot-bracket secondary structure
(..((
((((((((..(((((((((((
(....((((...............))))....)))
)))))))))..))))))))))
..).
SIMILARITIES
miRBase
tcc-MIR164b
:
0.00000002
PMRD
mtr-miR164c
:
1e-43
microPC
miR164
:
0.00002
UniProt
no hits
RFAM
MIR164: 2e-42
Identical with:
mtr-miR164c
from PMRD (
MNEST048710
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
454, Northern
references
[
1
] Bonnet E,
Unpublished (2007).
,
[
2
] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R,
New Phytol. 184:85-98(2009).
,
"Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"