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Species belonging to selected taxon:

Medicago sativa, Trifolium pratense, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST040672
species: Medicago truncatula
miRNA family: MIR166
source: miRBase, original name: mtr-MIR166e (MI0005594)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCC

miRNA*
GGAATGTTGGCTGGCTCGAGG

mismatches: 5
bulges: 0

View larger
pre-miRNA
TTTGAGGGGAATGTTGGCTGGCTCGAGGCTTTTCAGTTTCACAAAGGAAGTTCAGTCTTAATTGTATGAACTATAAGGCTTCGGACCAGGCTTCATTCCC
C
TCAAA


dot-bracket secondary structure
.((((((((((((..(.((((..(((((((((..(((((.((((...(((......)))..))))..)))))..)))))))))..)))).)..)))))))
)
)))).



SIMILARITIES
miRBase ptc-MIR166f: 0.000000000006

PMRD mtr-miR166b: 1e-49

microPC miR166: 9e-51
UniProt no hits

RFAM mir-166: 3e-54

Identical with: miR166 from microPC (MNEST046081)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Bonnet E, Unpublished (2007).,




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