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Species belonging to selected taxon:
Medicago sativa
,
Trifolium pratense
,
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST040672
species:
Medicago truncatula
miRNA family:
MIR166
source:
miRBase, original name:
mtr-MIR166e
(
MI0005594
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCC
miRNA*
GGAATGTTGGCTGGCTCGAGG
mismatches:
5
bulges:
0
View larger
pre-miRNA
TTTGAGG
GGAATGTTGGCTGGCTCGAGG
CTTTTCAGTTTCACAAAGGAAGTTCAGTCTTAATTGTATGAACTATAAGGCT
TCGGACCAGGCTTCATTCCC
C
TCAAA
dot-bracket secondary structure
.((((((
((((((..(.((((..(((((
((((..(((((.((((...(((......)))..))))..)))))..))))))
)))..)))).)..)))))))
)
)))).
SIMILARITIES
miRBase
ptc-MIR166f
:
0.000000000006
PMRD
mtr-miR166b
:
1e-49
microPC
miR166
:
9e-51
UniProt
no hits
RFAM
mir-166: 3e-54
Identical with:
miR166
from microPC (
MNEST046081
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Bonnet E,
Unpublished (2007).
,