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Species belonging to selected taxon:
Medicago sativa
,
Trifolium pratense
,
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST040677
species:
Medicago truncatula
miRNA family:
MIR168
source:
miRBase, original name:
mtr-MIR168
(
MI0005603
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGCTTGGTGCTGGTCGGGAA
miRNA*
CCCGTCTTGCATCAATCGAAT
mismatches:
5
bulges:
0
View larger
pre-miRNA
CTGAT
TTGCTTGGTGCTGGTCGGGAA
CCATTACATCCACAGTTTCCGTAGAAACTTTCCCTTAGTAAATTGGAC
CCCGTCTTGCATCAATCGAAT
CAG
dot-bracket secondary structure
(((((
(((.(((((((.((.((((..
(((((((......((((((....))))))........))))..)))..
)))).)).))))))).)))))
)))
SIMILARITIES
miRBase
no hits
PMRD
mtr-miR168
:
8e-51
microPC
no hits
UniProt
no hits
RFAM
MIR168: 1e-49
Identical with:
mtr-miR168
from PMRD (
MNEST048716
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
454, Northern
references
[
1
] Bonnet E,
Unpublished (2007).
,
[
2
] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R,
New Phytol. 184:85-98(2009).
,
"Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"