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Species belonging to selected taxon:

Medicago sativa, Trifolium pratense, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST040677
species: Medicago truncatula
miRNA family: MIR168
source: miRBase, original name: mtr-MIR168 (MI0005603)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGCTTGGTGCTGGTCGGGAA

miRNA*
CCCGTCTTGCATCAATCGAAT

mismatches: 5
bulges: 0

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pre-miRNA
CTGATTTGCTTGGTGCTGGTCGGGAACCATTACATCCACAGTTTCCGTAGAAACTTTCCCTTAGTAAATTGGACCCCGTCTTGCATCAATCGAATCAG

dot-bracket secondary structure
((((((((.(((((((.((.((((..(((((((......((((((....))))))........))))..)))..)))).)).))))))).))))))))


SIMILARITIES
miRBase no hits

PMRD mtr-miR168: 8e-51

microPC no hits
UniProt no hits

RFAM MIR168: 1e-49

Identical with: mtr-miR168 from PMRD (MNEST048716)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Northern

references

[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"




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