miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Medicago sativa, Trifolium pratense, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST040685
species: Medicago truncatula
miRNA family: MIR169_6
source: miRBase, original name: mtr-MIR169h (MI0005623)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GAGCCAAAGATGACTTGCCGG

miRNA*
GGCAGTTGTCATTGGTTCAT

mismatches: 3
bulges: 1

View larger
pre-miRNA
GATTTGAGCCAAAGATGACTTGCCGGCATGCTGCCTGAAAAGCAAGAAGGGTGTTGTTTTGCTGGCAGTTGTCATTGGTTCATGTT

dot-bracket secondary structure
(((.((((((((.((..(((.(((((((.((.((((............))))...))..))))))))))..)).)))))))).)))


SIMILARITIES
miRBase mtr-MIR169o: 1e-43

PMRD vvi-miR169p: 0.00006

microPC miR169: 0.001
UniProt no hits

RFAM MIR169_2: 2e-42

Identical with: mtr-MIR169n from miRBase (MNEST040691)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Bonnet E, Unpublished (2007).,




Liczniki na strone;