ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR169_2
source: miRBase, original name: mtr-MIR169k (MI0005632)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGGTGATTTGCCGG miRNA* GGCAAGTTCCTCTTGGCTACA mismatches: 3 bulges: 0 |
pre-miRNA
GAATGCAGCCAAGGGTGATTTGCCGGCAGATATATATGAATATTCATAGAGATGCATGTGTCGGCAAGTTCCTCTTGGCTACATT
dot-bracket secondary structure
.((((.(((((((((..(((((((((((.((((.(((((....)))))...))..)).)))))))))))..))))))))).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
GAATGCAGCCAAGGGTGATTTGCCGGCAGATATATATGAATATTCATAGAGATGCATGTGTCGGCAAGTTCCTCTTGGCTACATT
dot-bracket secondary structure
.((((.(((((((((..(((((((((((.((((.(((((....)))))...))..)).)))))))))))..))))))))).))))
SIMILARITIES| miRBase mtr-MIR169c: 4e-43 PMRD ptc-miR169g: 0.0002 microPC no hits | UniProt no hits RFAM MIR169_2: 7e-42 |
Identical with: mtr-MIR169c from miRBase (MNEST040680) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
