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Species belonging to selected taxon:

Medicago sativa, Trifolium pratense, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST040691
species: Medicago truncatula
miRNA family: MIR169_6
source: miRBase, original name: mtr-MIR169n (MI0005636)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGCCAAAGATGACTTGCCG

miRNA*
GCAGTTGTCATTGGTTCATG

mismatches: 3
bulges: 1

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pre-miRNA
AGATTTGAGCCAAAGATGACTTGCCGGCATGCTGCCTGAAAAGCAAGAAGGGTGTTGTTTTGCTGGCAGTTGTCATTGGTTCATGTTTG

dot-bracket secondary structure
((((.((((((((.((..(((.(((((((.((.((((............))))...))..))))))))))..)).)))))))).)))).


SIMILARITIES
miRBase mtr-MIR169o: 2e-45

PMRD vvi-miR169p: 0.00007

microPC no hits
UniProt no hits

RFAM MIR169_2: 3e-44

Identical with: mtr-MIR169h from miRBase (MNEST040685)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
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references

[1] Bonnet E, Unpublished (2007).,




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