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Species belonging to selected taxon:
Medicago sativa
,
Trifolium pratense
,
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST040691
species:
Medicago truncatula
miRNA family:
MIR169_6
source:
miRBase, original name:
mtr-MIR169n
(
MI0005636
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAGCCAAAGATGACTTGCCG
miRNA*
GCAGTTGTCATTGGTTCATG
mismatches:
3
bulges:
1
View larger
pre-miRNA
AGATT
TGAGCCAAAGATGACTTGCCG
GCATGCTGCCTGAAAAGCAAGAAGGGTGTTGTTTTGCTG
GCAGTTGTCATTGGTTCATG
TTTG
dot-bracket secondary structure
((((.
((((((((.((..(((.((((
(((.((.((((............))))...))..)))))
)))))..)).)))))))).)
))).
SIMILARITIES
miRBase
mtr-MIR169o
:
2e-45
PMRD
vvi-miR169p
:
0.00007
microPC
no hits
UniProt
no hits
RFAM
MIR169_2: 3e-44
Identical with:
mtr-MIR169h
from miRBase (
MNEST040685
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
references
[
1
] Bonnet E,
Unpublished (2007).
,