ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR171_1
source: miRBase, original name: mtr-MIR171 (MI0001753)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGTCGTGCCAATATC miRNA* TGTTGGCTTGTCTCAATCAAA mismatches: 2 bulges: 0 |
pre-miRNA
TGAATTCCCCTCCGCTTTTTGATGTTGGCTTGTCTCAATCAAATCAAAGTTCTTGAAATTTGAGTTCTTTAGTCTGATTGAGTCGTGCCAATATCATATT
AAGCGATAAAAGTC
dot-bracket secondary structure
............(((((..((((((((((.((.((((((((.((.((((..((..(...)..))..)))).)).)))))))).)).))))))))))....
))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
TGAATTCCCCTCCGCTTTTTGATGTTGGCTTGTCTCAATCAAATCAAAGTTCTTGAAATTTGAGTTCTTTAGTCTGATTGAGTCGTGCCAATATCATATT
AAGCGATAAAAGTC
dot-bracket secondary structure
............(((((..((((((((((.((.((((((((.((.((((..((..(...)..))..)))).)).)))))))).)).))))))))))....
))))).........
SIMILARITIES| miRBase tcc-MIR171g: 0.000000006 PMRD vvi-miR171a: 0.00000009 microPC miR171: 0.000006 | UniProt no hits RFAM MIR171_1: 3e-17 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
