ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR172
source: miRBase, original name: mtr-MIR172 (MI0005600)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCCTGATGATGCTGCAG miRNA* GGAGCATCATCAGGATTCACA mismatches: 3 bulges: 0 |
pre-miRNA
GCCGGTGGAGCATCATCAGGATTCACAAGATTTTGAAGGGTTTAATTTGTTTTGATTGTTTCAAATAGATTAGCCCTTTGACATATGAGAATCCTGATGA
TGCTGCAGCTGCA
dot-bracket secondary structure
((.(.((.((((((((((((((((.((..((.(..(((((((.(((((((((.((.....))))))))))))))))))..).)).)).))))))))))))
)))).)).).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Northern
references
[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
GCCGGTGGAGCATCATCAGGATTCACAAGATTTTGAAGGGTTTAATTTGTTTTGATTGTTTCAAATAGATTAGCCCTTTGACATATGAGAATCCTGATGA
TGCTGCAGCTGCA
dot-bracket secondary structure
((.(.((.((((((((((((((((.((..((.(..(((((((.(((((((((.((.....))))))))))))))))))..).)).)).))))))))))))
)))).)).).)).
SIMILARITIES| miRBase ath-MIR172c: 0.00000009 PMRD ath-miRf11051-akr: 0.00000009 microPC miR172: 0.00009 | UniProt no hits RFAM mir-172: 2e-58 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Northern
references
[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
