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Species belonging to selected taxon:
Medicago sativa
,
Trifolium pratense
,
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST040712
species:
Medicago truncatula
miRNA family:
MIR395
source:
miRBase, original name:
mtr-MIR395e
(
MI0005072
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATGAAGTGTTTGGGGGAACTC
miRNA*
GTTCCTTTGAACGCTTCATGC
mismatches:
2
bulges:
0
View larger
pre-miRNA
GA
GTTCCTTTGAACGCTTCATGC
ATGAGAATATCTATCTATTTGGTTTAAAATCCATTAGGATAGATAGTTCTTCTTAA
ATGAAGTGTTTGGGGGAACTC
dot-bracket secondary structure
((
(((((((..((((((((((..
..((((((((((((((...(((........)))...)))))))).)))))).....
))))))))))..)))))))))
SIMILARITIES
miRBase
mtr-MIR395m
:
8e-45
PMRD
mtr-miR395e
:
5e-52
microPC
miR395
:
0.00007
UniProt
no hits
RFAM
mir-395: 9e-51
Identical with:
mtr-miR395e
from PMRD (
MNEST048736
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L,
Cell Res. 15:631-638(2005).
,
"Molecular evolution of the rice miR395 gene family"