miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Medicago sativa
,
Trifolium pratense
,
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST040714
species:
Medicago truncatula
miRNA family:
MIR395
source:
miRBase, original name:
mtr-MIR395g
(
MI0005074
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGAAGTGTTTGGGGGAACTC
miRNA*
GTTCCTCTGAACGCTTCATAT
mismatches:
3
bulges:
0
View larger
pre-miRNA
GA
GTTCCTCTGAACGCTTCATAT
AAGAGGTTATCCATCTTCA
TTGAAGTGTTTGGGGGAACTC
dot-bracket secondary structure
((
(((((((..(((((((((...
((((((....)).))))..
.)))))))))..)))))))))
SIMILARITIES
miRBase
mtr-MIR395h
:
0.0000002
PMRD
mtr-miR395g
:
4e-30
microPC
miR395
:
0.00004
UniProt
no hits
RFAM
mir-395: 6e-29
Identical with:
mtr-miR395g
from PMRD (
MNEST048738
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L,
Cell Res. 15:631-638(2005).
,
"Molecular evolution of the rice miR395 gene family"