ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR395
source: miRBase, original name: mtr-MIR395n (MI0005081)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGAAGTGTTTGGGGGAACTC miRNA* GTTCCTTTGAACGCTTCATGC mismatches: 2 bulges: 0 |
pre-miRNA
GAGTTCCTTTGAACGCTTCATGCATGAGAATATCTATCTATTTGGTCTAAAGTCCATTAGAAAAGATAGCCATTTTTTCAATGAAGTGTTTGGGGGAACT
C
dot-bracket secondary structure
(((((((((..((((((((((....((((((..((((((...(((.(....).))).......))))))..))))))...))))))))))..))))))))
)
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L, Cell Res. 15:631-638(2005)., "Molecular evolution of the rice miR395 gene family"
GAGTTCCTTTGAACGCTTCATGCATGAGAATATCTATCTATTTGGTCTAAAGTCCATTAGAAAAGATAGCCATTTTTTCAATGAAGTGTTTGGGGGAACT
C
dot-bracket secondary structure
(((((((((..((((((((((....((((((..((((((...(((.(....).))).......))))))..))))))...))))))))))..))))))))
)
SIMILARITIES| miRBase mtr-MIR395r: 1e-52 PMRD mtr-miR395n: 1e-52 microPC miR395: 0.00008 | UniProt no hits RFAM mir-395: 2e-51 |
Identical with: mtr-MIR395r from miRBase (MNEST040725) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L, Cell Res. 15:631-638(2005)., "Molecular evolution of the rice miR395 gene family"
